Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred.Koch CM, Chiu SF, Akbarpour M, Bharat A, Ridge KM, Bartom ET, Winter DR (2018) A Beginner’s guide to analysis of RNA sequencing data.Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-seq.Byron SA, Van Keuren-Jensen KR, Engelthaler DM, Carpten JD, Craig DW (2016) Translating RNA sequencing into clinical diagnostics: opportunities and challenges.Ozsolak F, Milos PM (2011) RNA sequencing: advances, challenges and opportunities. This tutorial series can be used with CLC Genomics Workbench 7.Using Partek Flow, we will demonstrate each analysis step with simple point-and-click actions.Royce TE, Rozowsky JS, Gerstein MB (2007) Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.The software supports a large number of DNA, RNA, and protein sequence analyses and microarray analysis.
#CLC MAIN WORKBENCH TUTORIAL HOW TO#
Okoniewski MJ, Miller CJ (2006) Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations. Introduction to CLC Main Workbench Current Status Not Enrolled Price Free Get Started Login to Enroll In this hands-on training you will learn how to use the CLC Bio Main Workbench for basic and advanced sequence analysis.The program uses a SIMD-accelerated assembly algorithm that can analyze high-throughput sequencing data faster. van Hal NL, Vorst O, van Houwelingen AM, Kok EJ, Peijnenburg A, Aharoni A, van Tunen AJ, Keijer J (2000) The application of DNA microarrays in gene expression analysis. Clc Main Workbench Tutorial CLC Genomics Workbench is a program that allows you to analyze, compare and visualize NGS data.a list of tutorials explaining how to perform various analyses in the Workbench, both from BITS and from CLC Bio. You can simply import this list into a folder in your Workbench. Wang Z, Gerstein M, Snyder M (2009) RNA-seq: a revolutionary tool for transcriptomics. Since adding and annotating vector sequences to the Workbench is a cumbersome task, you can download an extensive list of annotated vector sequences, compiled by BITS.
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